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GRC alignments

FGENESH prediction

This track comprises multiple analyses; tRNA models predicted with tRNAscan-SE (release 1.3.1).; Covariance models from Rfam (release 12.2), aligned to the genome with 'cmscan' from the Infernal suite of programs. Models are restricted to those observed in species that share a last common ancestor (LCA).

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FGENESH prediction

This track comprises multiple analyses; mRNA feature annotated in ENA; exon feature annotated in ENA; misc_feature feature annotated in ENA; intron feature annotated in ENA

Genes and transcripts

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Genes (Genes (Ensembl))

This track comprises multiple analyses; Chloroplast protein-coding genes imported from Genbank.; Genes by The Rice Annotation Project (RAP) dated 2022-09-01.; Mitochondrial gene models imported from Genbank.
Rfam RNA Genes (Genes)

RNA genes produced by filtering alignments of Rfam (release 12.2) covariance models.
ncRNA Genes (Genes)

ncRNA genes annotated in ENA
tRNA Genes (Genes)

RNA genes produced by filtering predictions from tRNAscan-SE v1.23.

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mRNA and protein alignments

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BLASTz/LASTz net pairwise alignments:

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