Active tracks

Favourite tracks

Search results

Sorry, your search did not find any tracks

Track order

You have no favourite tracks. Use the star

icon to add tracks to your favourites

Sequence and assembly

Change track style
Off
On

Enable/disable all Sequence

Contigs

Track showing underlying assembly contigs.
Sequence

Track showing sequence in both directions. Only displayed at 1Kb and below.

GRC alignments

FGENESH prediction

This track comprises multiple analyses; Covariance models from Rfam (release 12.2), aligned to the genome with 'cmscan' from the Infernal suite of programs. Models are restricted to those observed in species that share a last common ancestor (LCA).; tRNA models predicted with tRNAscan-SE (release 1.3.1).

Change track style
Off
On
With labels

Enable/disable all Simple features

FGENESH prediction

This track comprises multiple analyses; misc_feature feature annotated in ENA; intron feature annotated in ENA; mRNA feature annotated in ENA; exon feature annotated in ENA

Genes and transcripts

Change track style
Off
No exon structure without labels
No exon structure with labels
Expanded without labels
Expanded with labels
Collapsed without labels
Collapsed with labels
Coding transcripts only (in coding genes)

Enable/disable all Genes

Genes (Genes (Ensembl))

This track comprises multiple analyses; Chloroplast protein-coding genes imported from Genbank.; Genes by The Rice Annotation Project (RAP) dated 2022-09-01.; Mitochondrial gene models imported from Genbank.
Rfam RNA Genes (Genes)

RNA genes produced by filtering alignments of Rfam (release 12.2) covariance models.
ncRNA Genes (Genes)

ncRNA genes annotated in ENA
tRNA Genes (Genes)

RNA genes produced by filtering predictions from tRNAscan-SE v1.23.

Change track style
Off
No labels
With labels

Enable/disable all Prediction transcripts

FGENESH prediction

Ab initio prediction of protein coding genes, based on the genomic sequence alone AA Salamov et al., Genome Res. 2000 4:516-22.
MSU7 TE-related genes

TE-related Gene annotation by MSU through a process of automatic and manual curation
FGENESH prediction

This track comprises multiple analyses; TE-related Gene annotation by MSU through a process of automatic and manual curation; Fgenesh is a fast and accurate HMM-based ab-initio gene prediction program Salamov AA, Solovyev VV. Genome Res. 2000

mRNA and protein alignments

Change track style
Off
Normal
Unlimited
Coverage only

Enable/disable all mRNA alignments

Change track style
Off
Normal
Labels
Half height
Stacked
Stacked unlimited
Ungrouped

Enable/disable all RNA alignments

Comparative genomics

Change track style
Off
Compact
Normal

Enable/disable all tracks

Variation

Change track style
Off
Normal (collapsed for windows over 200kb)
Collapsed
Expanded with name (hidden for windows over 10kb)
Expanded without name

Enable/disable all Sequence variants

Sequence variants (all sources) (Variant - All sources)

Sequence variants from all sources

Change track style
Off
Normal (collapsed for windows over 200kb)
Collapsed
Expanded with name (hidden for windows over 10kb)
Expanded without name

Enable/disable all Variation sets

Change track style
Off
Expanded
Compact

Enable/disable all Phenotype annotations

Change track style
Off
Compact
Expanded

Enable/disable all Structural variants

Smaller structural variants (all sources) (SV - Smaller variants)

Structural variants from all sources which are less than 1Mb in length. The colours correspond to the structural variant classes.
For an explanation of the display, see the dbVar documentation.

Repeat regions

Change track style
Off
On

Enable/disable all tracks

Information and decorations

Change track style
Off
On

Enable/disable all tracks

Chromosome bands

Cytogenetic bands
Scale bar ()

Shows the scalebar
Ruler ()

Shows the length of the region being displayed
Alignment Difference Legend
Gene Legend
Variant Legend
Structural Variant Legend
Display in-track labels
Highlight current feature
Disabled track summary ()

Show counts of number of tracks turned off by the user
Information ()

Details of the region shown in the image

Display options

Width of image:

Looking for more data? Search the Trackhub Registry for external sources of annotation

Key

Track style
Forward strand
Reverse strand
Favourite track
Track information

External data
User-added track

Please note that the content of external tracks is not the responsibility of the Ensembl project.

URL-based tracks may either slow down your ensembl browsing experience OR may be unavailable as these are served and stored from other servers elsewhere on the Internet.