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Sequence and assembly

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Contigs

Track showing underlying assembly contigs.
Sequence

Track showing sequence in both directions. Only displayed at 1Kb and below.

Genes and transcripts

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Coding transcripts only (in coding genes)

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Gramene Genes (Gramene gene)

Gene annotation by Gramene through an automated, evidence-based method
MAKER tRNA genes annotation (MAKER tRNA annotation)

tRNA genes annotation by Doreen Ware's group through MAKER gene annotation pipeline.
Zm-B73-REFERENCE-GRAMENE-4.0 annotation

Protein coding genes annotated by Doreen Ware's group through MAKER gene annotation pipeline. Read more...
lncRNA Gene

long intergenic Non-coding RNA genes collected from literature and mapped to Maize APPv4 by Doreen Ware's group in CSHL. Read more...

Regulation

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root_rep1 (B73 H3K27ac)

root_rep1 (B73 H3K27ac)
root_rep1 (B73 H3K4me)

root_rep1 (B73 H3K4me)
root_rep1 (B73 H3K4me3)

root_rep1 (B73 H3K4me3)
root_rep1 (B73 Input)

root_rep1 (B73 Input)
root_rep1 forward (B73 RAMPAGE)

root_rep1 forward (B73 RAMPAGE), see workflow
root_rep1 forward (B73 RNAseq)

root_rep1 forward (B73 RNAseq), see workflow
root_rep1 forward (NC350 RAMPAGE)

root_rep1 forward (NC350 RAMPAGE), see workflow
root_rep1 forward (NC350 RNAseq)

root_rep1 forward (NC350 RNAseq), see workflow
root_rep1 forward (Ti11 RNAseq)

root_rep1 forward (Ti11 RNAseq), see workflow
root_rep1 forward (W22 RAMPAGE)

root_rep1 forward (W22 RAMPAGE), see workflow
root_rep1 forward (W22 RNAseq)

root_rep1 forward (W22 RNAseq), see workflow
root_rep1 reverse (B73 RAMPAGE)

root_rep1 reverse (B73 RAMPAGE), see workflow
root_rep1 reverse (B73 RNAseq)

root_rep1 reverse (B73 RNAseq), see workflow
root_rep1 reverse (NC350 RAMPAGE)

root_rep1 reverse (NC350 RAMPAGE), see workflow
root_rep1 reverse (NC350 RNAseq)

root_rep1 reverse (NC350 RNAseq), see workflow
root_rep1 reverse (Ti11 RNAseq)

root_rep1 reverse (Ti11 RNAseq), see workflow
root_rep1 reverse (W22 RAMPAGE)

root_rep1 reverse (W22 RAMPAGE), see workflow
root_rep1 reverse (W22 RNAseq)

root_rep1 reverse (W22 RNAseq), see workflow
root_rep2 (B73 H3K27ac)

root_rep2 (B73 H3K27ac)
root_rep2 (B73 H3K4me)

root_rep2 (B73 H3K4me)
root_rep2 (B73 H3K4me3)

root_rep2 (B73 H3K4me3)
root_rep2 (B73 Input)

root_rep2 (B73 Input)
root_rep2 forward (B73 RAMPAGE)

root_rep2 forward (B73 RAMPAGE), see workflow
root_rep2 forward (B73 RNAseq)

root_rep2 forward (B73 RNAseq), see workflow
root_rep2 forward (NC350 RAMPAGE)

root_rep2 forward (NC350 RAMPAGE), see workflow
root_rep2 forward (NC350 RNAseq)

root_rep2 forward (NC350 RNAseq), see workflow
root_rep2 forward (Ti11 RNAseq)

root_rep2 forward (Ti11 RNAseq), see workflow
root_rep2 forward (W22 RAMPAGE)

root_rep2 forward (W22 RAMPAGE), see workflow
root_rep2 forward (W22 RNAseq)

root_rep2 forward (W22 RNAseq), see workflow
root_rep2 reverse (B73 RAMPAGE)

root_rep2 reverse (B73 RAMPAGE), see workflow
root_rep2 reverse (B73 RNAseq)

root_rep2 reverse (B73 RNAseq), see workflow
root_rep2 reverse (NC350 RAMPAGE)

root_rep2 reverse (NC350 RAMPAGE), see workflow
root_rep2 reverse (NC350 RNAseq)

root_rep2 reverse (NC350 RNAseq), see workflow
root_rep2 reverse (Ti11 RNAseq)

root_rep2 reverse (Ti11 RNAseq), see workflow
root_rep2 reverse (W22 RAMPAGE)

root_rep2 reverse (W22 RAMPAGE), see workflow
root_rep2 reverse (W22 RNAseq)

root_rep2 reverse (W22 RNAseq), see workflow

Repeat regions

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Information and decorations

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