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About Sorghum bicolor Tx2783
Sorghum bicolor (L.) Moench subsp. bicolor, Tx2783 is a widely utilized pollinator parent with sugarcane aphid (SCA)-resistance (Armstrong et al, 2015; Tetreault et al, 2019).
Tx2783 has a complex pedigree (IS12610C/((((ROK Y8/Tx 2536)/SC110 -9)/SC599)/SC110 -14 E)) and was first released by Texas A&M AgriLife Research in 1984 (Peterson et al, 1984). It was first bred for resistance to sorghum greenbug (Schizaphis graminum Rondani) biotypes C and E; and later on, shown to be highly resistant to the sugarcane aphid (Armstrong et al, 2015; Tetreault et al, 2019).
Germplasm & Population Panels
S. bicolor ‘Tx2783' (GRIN: PI 656001) is derived from Capbam, and part of the following population panels: * Sorghum Association Panel (SAP) - 407 accessions (Casa et al, 2008)
IPR
Crop Science Registration. GP-137, SORGHUM. Issued: 01 Mar 1984. * 1984. Crop Sci. (Madison) 24(2):390. Note: GP-137
Taxonomy ID 4558
Genome assembly: Sorghum_bicolor-Tx2783-Reference-CSHL-USDA-1.0
More information and statistics
Download DNA sequence (FASTA)
Display your data in Ensembl Plants
Gene annotation
What can I find? Protein-coding and non-coding genes, splice variants, cDNA and protein sequences, non-coding RNAs.
Comparative genomics
What can I find? Homologues, gene trees, and whole genome alignments across multiple species.
Variation
What can I find? Short sequence variants.
More about variation in Ensembl Plants
Variation
About 32.5 million SNPs were called in 400 SAP lines by Rod Wing's group with the HPC-based AFW-GVC/GATK4 pipeline [Yong Zhou, Nagarajan Kathiresan and Rod A. Wing (2023), manuscript in preparation], and are now available from the Tx2783 genome browser. See for example 4_6047465_C_T, a SNP predicted to introduce a STOP codon and result in a truncated SbiRTX2783.04G076100 protein product.
Image
There are no images for this accession in the GRIN database.
Links
U.S. National Plant Germplasm System (GRIN - Global): PI 656001.
